Browsers | Classifier | LibCompare | SeqMatch | Probe Match | FunGene | RDPipeline | SeqCart | Taxomatic | Tree Builder | AssignGen

RDP Tutorials

[ go to Hierarchy Browser | Hierarchy Browser help ]

RDP's Hierarchy Browser -- Browse a phylogenetic hierarchy and compile a list of 16S rRNA sequences for download or use.

Select the version best adapted for your browser/computer. Remember, Flash versions have closed captioning that can be turned on or off using the closed captioning symbol or the x symbol in the lower right side.

*Tutorials will open in a new browser window
Return to tutorial menu

Hierarchy Browser

I Introduction I flash 12.7MB quicktime 17.7MB winmedia 33.2MB

Browser basics
Selecting a dataset for analysis

II Selecting Sequences II flash 7.3MB quicktime 11.4MB winmedia 21.3MB

Making a selection from individual sequences to entire taxa

III Search Options III flash 8.0MB quicktime 11.7MB winmedia 19.3MB

Searching your dataset
Selecting sequences that match the search criteria

IV Advanced Search Options IV flash 7.8MB quicktime 12.4MB winmedia 18.8MB

Advanced search techniques
By publication
Using wildcards
Fuzzy and/or proximity searches

V Download Options V flash 5.4MB quicktime 7.4MB winmedia 12.3MB

Formats
Navigation tree
Distance matrices

Questions/comments: rdpstaff@msu.edu