RDP: Release 11

ANNOUNCEMENTS

RDP News

01/04/2022  RDP Systems Are Running
RDP and FunGene websites are back online! We experienced a multi-server hardware failure in October that took the sites offline The cause has stil...

10/04/2020  RDP Taxonomy Updated
Now using RDP taxonomy 18. Check the updated release and reinstall any older versions of the rdp classifier to use the new taxonomy.

12/12/2018  RDP and Fungene Pipelines are back online now!
The issues causing long delays in RDP and Fungene Pipelines in the past week have been resolved. Users need to re-submit the jobs for which resul...

12/06/2018  RDP and Fungene Pipeline problems
RDP Pipeline and Fungene Pipeline are currently not working properly due to technical issues. While RDP team is working hard on restoring the servi...

11/14/2018  myRDP and RDP Pipeline back to normal
The issue that caused submitted jobs being delayed in myRDP and RDP Pipeline has been resolved. All service functions are working normally.

06/05/2018  RDP phone system restored
RDP phone service is now back online.

06/04/2018  RDP phone system down
RDP phone system is temporarily out of service!

03/05/2018  RDP web tool problems fixed!

03/05/2018  RDP web tool problems
We apologize for ongoing problems with several RDP web tools. Our team is now working hard to get them fixed!

11/10/2017  myRDP login problem fixed!

myRDP
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RDP Taxonomy 18 :: August 14, 2020

RDP Release 11, Update 5 :: September 30, 2016

3,356,809 16S rRNAs :: 125,525 Fungal 28S rRNAs
Find out what's new in RDP Release 11.5 here.

Cite RDP's latest tool articles.


RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community. New to RDP release 11:

  • RDP tools have been updated to work with the new fungal 28S rRNA sequence collection.
  • A new Fungal 28S Aligner and updated Bacterial and Archaeal 16S Aligner. We optimized the parameters for these secondary-structure based Infernal aligners to provide improved handling for partial sequences.
  • Updated RDPipeline offers extended processing and analysis tools to process high-throughput sequencing data, including single-strand and paired-end reads.
  • Most of the RDP tools are now available as open source packages for users to incorporate in their local workflow.

Hierarchy Browser
Hierarchy
Browser

RDP Classifier

Classifier

Probe Match
Probe
Match

FunGene

FunGene

MIxS GoogleSheets
MIxS
GoogleSheets

Library Compare
Library
Compare

Sequence Match
Sequence
Match

RDPipeline

RDPipeline

RDP Aligner

Aligner

Tree Builder
Tree
Builder

RDP Open Source Tools
RDP
Open Source

Tutorials

Tutorials

RDP's mission and funding:

Part of RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.

DOE   NIEHS Superfund Research ProgramNIH Human Microbiome Project

Questions/comments: rdpstaff@msu.edu
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