Make a taxon abundance table

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Often times you need to make a table summarizing sequence counts assigned to all taxa (rows) from all your samples (columns), similar to an OTU table. You can make this table by first running RDP Classifier on multiple sample files (FASTA) and then selecting appropriate columns and rows (using Excel or other spreadsheet tools) from the classification summary file (-h option).

The same classification summary file can be imported for further analyses using Phyloseq.

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