The FASTQ Tool is in the menu of the RDPipeline
The FASTQ Tool is a java web start program that merges FASTA and quality file to Fastq file (requires Java 5 or above).
Right click the fastq and choose download linked file.Go the dowload file and right click fastq.jnlp, choose "Open with", "Java Web Start".
Upload fasta and qual file, and click "Create fastq file" and choose a path to save your fastq file.
Download sample input files (flx_test_bothdirection.fna;flx_test_bothdirection.qual).
Download sample output files(flx_test_bothdirection.fastq).
The merged fastq file can be used as input for single-stranded reads initial process.