CONTENTS | RDPipeline | RDP Home
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Aligner (Infernal)
Complete Linkage Clustering
Chimera Removal
Classifier
Command-line RDPTools with Phyloseq
Data Preprocessing
Defined Community Analysis
FASTA file format
FrameBot (Frameshift correction)
Functional Gene Data
Generate OTU table (R-compatible community data matrix)
GitHub Repository (RDPstaff)
HMMER3 Aligner
Initial Processing
IUPAC Standard
Jaccard-Sørensen Index
Pipeline Initial Process
Phyloseq
Rarefaction
R Statistical Analysis
Sample Abundance Statistics
SFF file format
Shannon and Chao1 Index
Sørensen Index
Workflows for 16S and functional gene data
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