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Classifier - Start

[ video tutorial | help ]

Introduction

Use our classifier to assign 16S rRNA gene sequences to the new phylogenetically consistent higher-order bacterial taxonomy proposed by Garrity et. al. Hierarchical taxa is based on a naïve Bayesian rRNA classifier. The newly trained classifier allows classification of both bacterial and archaeal 16S rRNA sequences. Classification algorithm has been published. Please cite: Wang, Q, G. M. Garrity, J. M. Tiedje, and J. R. Cole. 2007. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol. 73(16):5261-7. The Classifier command line program, along with the source code, javadoc, example taxonomy and sequence files, and help files, is freely available from sourceforge and is released under the terms of the GNU General Public License.

Help topics: Taxonomic Hierarchy Model and Classification Algorithm

Partial sequences with length shorter than 250 bps should use bootstrap cutoff 50%.


Please enter your sequences:


Did you know you can select sequences from myRDP and Hierarchy Browser to do classification?


Choose a file to upload:


Cut and paste sequence(s) (in Fasta, GenBank, or EMBL format):

   

 

Questions/comments: rdpstaff@msu.edu

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