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How to cite services from this site


If you download data or use software available from RDP, please cite us in the following way:

Cole, J. R., Q. Wang, E. Cardenas, J. Fish, B. Chai, R. J. Farris, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, T. Marsh, G. M. Garrity, and J. M. Tiedje. 2008. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37 (Database issue): D141-145; doi:10.1093/nar/gkn879. [Oxford University Press]

If you use RDP Classifier, please cite: Wang, Q, G. M. Garrity, J. M. Tiedje, and J. R. Cole. 2007. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol. 73(16):5261-7. [Abstract]


For more details on using RDP tools, please read chapter 36,
Cole J.R., Q. Wang, B. Chai and J.M. Tiedje. 2011. The Ribosomal Database Project: sequences and software for high-throughput rRNA analysis. In F.J. de Bruijn (ed), Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, J. Wiley & Sons, Inc., Hoboken, NJ.

Effective 2000/06/01

Previous RDP Publications


Cole, J. R., B. Chai, R. J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, G. M. Garrity, and J. M. Tiedje. 2007. The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35 (Database issue): D169-D172; doi: 10.1093/nar/gkl889. [Abstract]

Cole, J. R., B. Chai, R. J. Farris, Q. Wang, S. A. Kulam, D. M. McGarrell, G. M. Garrity, and J. M. Tiedje. 2005. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. Jan 1;33(Database Issue):D294-D296. doi: 10.1093/nar/gki038. [PMID: 15608200 | Oxford University Press]

Cole, J. R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. Jan 1;31(1):442-3. [PMID: 12520046]

Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker, Jr., P. R. Saxman, R. J. Farris, G. M. Garrity, G. J. Olsen, T. M. Schmidt, and J. M. Tiedje. 2001. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. Jan 1;29(1):173-4. [PMID: 11125082]

Maidak, B. L., J. R. Cole, C. T. Parker, Jr., G. M. Garrity, N. Larsen, B. Li, T. G. Lilburn, M. J. McCaughey, G. J. Olsen, R. Overbeek, S. Pramanik, T. M. Schmidt, J. M. Tiedje, and C. R. Woese. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. Jan 1;28(1):173-4. [PMID: 10592216]

Maidak, B. L., G. J. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1999. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res. Jan 1;27(1):171-3. [PMID: 9847171]

Maidak, B. L., G. J. Olsen, N. Larsen, R. Overbeek, M. J. McCaughey, and C. R. Woese. 1997. The RDP (Ribosomal Database Project). Nucleic Acids Res. Jan 1;25(1):109-11. [PMID: 9016515]

Maidak, B. L., N. Larsen, M. J. McCaughey, R. Overbeek, G. J. Olsen, K. Fogel, J. Blandy, and C. R. Woese. 1996. The Ribosomal Database Project (RDP). Nucleic Acids Res. 1996 Jan 1;24(1):82-5. [[PMID: 8594608]

Larsen, N., G. J. Olsen, B. L. Maidak, M. J. McCaughey, R. Overbeek, T. J. Macke, T. L. Marsh, and C. R. Woese. 1993. The ribosomal database project. Nucleic Acids Res. Jul 1;21(13):3021-3. [PMID: 8332524]

Olsen, G. J., R. Overbeek, N. Larsen, T. L. Marsh, M. J. McCaughey, M. A. Maciukenas, W. M. Kuan, T. J. Macke, Y. Xing, and C. R. Woese. 1992. The Ribosomal Database Project. Nucleic Acids Res. May 11;20 Suppl:2199-200. [PMID: 1598241]

 

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