RIBOSOMAL DATABASE PROJECT - II of the Center for Microbial Ecology at Michigan State University
Release
9.61 ::
May 22, 2008 ::
513,272 16S rRNAs
(More on Release 9 and monthly updates
is available in the release notes.)
06/05/2008
RDP posters from ASM now available. The RDP websites will be unavailable the evening of Friday, June 6. [more]
05/22/2008
RDP 9, Update 61 Released. RDP Classifier training data updated. [more]
03/05/2008
RDP 9, Update 59 Released.
This release includes a beta version of the new Taxomatic visualization tool. [more]
08/08/2007
RDP 9, Update 53 Released using TOBA Release 7.7 (The Taxonomic Outline of Bacteria and Archaea). [more]
06/08/2007
RDP 9, Update 51 Released. It's now possible to find sequences from completed genomes by searching with the GenBank Project ID. [more]
04/03/2007
RDP 9, Update 49 Released. Upgraded Tree Builder now includes bootstrap confidence estimates.[more]
03/22/2007
New video tutorials available in Flash, Quicktime and Windows Media formats. [more]
08/22/2006
Introducing simple chromatograms upload and research buddies to myRDP.
Quality filter can be applied to view only good quality sequences.[more]
03/23/2006
Batch retrieval by GenBank accession numbers available.[more]
02/02/2006
RDP 9, Update 36 Released. ARB import help available. [more]
RDP Analysis Tools
Educational :: Class Assignment Generator - Professors / Instructors: Generate assignments for your class that use RDP Classifier and Seqmatch.
- myRDP - Align and Classify your 16S rRNA sequences. Use the RDP Pipeline to process sequence libraries from raw sequencer output to analysis.
- Hierarchy Browser -
Browse a phylogenetic hierarchy and compile a list of 16S rRNA sequences for download or use. Also browse by Publication or Genome.
- Tree Builder - Create a phylogenetic tree.
- Classifier -
Assign 16S rRNA sequences to our taxonomical hierarchy.
- Library Compare -
Compare two sequence libraries using the RDP Classifier.
- Sequence Match -
Upload your sequence and search for its nearest neighbors.
- Probe Match -
See what your probe targets in our database.
- Other Resources -
Alignment files, ASM posters, user-submitted data.
- Release 8.1 - The old RDP site (Release 8.1). Uses an outdated dataset. Please Note: The RDP 8.1 site will be shutdown soon
Pyrosequencing Pipeline - Process, Align, Cluster, Dereplicate, and convert large amounts of pyrosequencing (454) data. This version of the Pyrosequencing Pipeline handles the V4 region of the 16s rRNA.
RDP Release 10 Beta Site - Try out the RDP Release 10 (RDPX) Beta website. RDPX introduces an updated alignment strategy as well as a new Archaeal alignment.
The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial small-subunit 16S rRNA sequences.
Sponsors:
Support:
Part of the RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
Questions/comments: rdpstaff@msu.edu
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