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RDP Release 10, Update 32 :: May 14, 2013 :: 2,765,278  16S rRNAs

link to new window with RDP's latest NAR article

The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial and Archaeal small-subunit 16S rRNA sequences.


RDP Release 10 brings two major changes to the RDP:

  • RDP10 provides new Bacterial and Archaeal alignments with several significant enhancements over the previous RDP 9 alignments.

  • Use of the Infernal secondary-structure based aligner that provides better support for short partial sequences and handles certain sequencing artifacts in a more intuitive manner.

Explore our online analysis tools:


HOVER over any tool item in the menu to see a brief popup description of its features;

CLICK on the tool menu item to begin working with it.

Try our NEW PROCEDURAL TUTORIALS to use our site to your fullest advantage.

cameraIconBe sure to view the video tutorials and visit each tool's help file if needed.




Sponsors:

ober-doe logo and link        NIEHS Superfund Research Program



Support:


Part of the RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
myRDP logo and link
login





RDP News

06/06/2013  Amplicon chimera checking with uchime
The functional gene pipeline now offers a tool to check amplicon sequencing datasets for chimeras powered by 05/14/2013   RDP 10, update 32 released
RDP release 10.32 contains 2,765,278 aligned 16S rRNA sequences

04/30/2013  Email problem resolved
If your email was bounced, please resend, "We're Baaack"

03/02/2013  System Maintenance 2013-03-06
All websites will be taken offline Wednesday 5-7pm eastern time for regular system maintenance

12/12/2012  (Resolved) myRDP login issues
UPDATE: Issue resolved, users are now able to login.

We are investigating an issue that is preventing users from logging in to myRDP.

12/11/2012  RDP Hardware Upgrades
To keep up with increasing demands on our sites we've added 5 new hosts to the Pyro, Fungene, and CME website cluster.

Additionally we...

12/07/2012  RDP 10, update 31 released
RDP release 10.31 contains 2,639,157 aligned 16S rRNA sequences

11/26/2012  Scheduled site maintenance
The pyro, fungene, and cme websites will be briefly unavailable this afternoon while we perform some routine hardware maintenance. The downtime wi...

11/11/2012  Announcing the new RDP Wiki!
We are pleased to announce the release of the RDP Wiki, available at http://rdp.cme.msu.edu/wiki

10/25/2012  More RDP Tools on github
Links:
FrameBot prebuilt jar on sourceforge