RDP: Release 11

ANNOUNCEMENTS

RDP News

03/26/2014  Informatics Professional job opening at RDP
Work with a team developing important bioinformatics resources.

03/19/2014  All services should be back online!
Sorry for the interruption.

03/19/2014  RDP Site Issues
Some services temporarily unavailable.

03/07/2014  RDP Release 11.2
RDP Release 11.2 features updated Fungal 28S LSU hierarchy model

11/08/2013  Fungene Repository Release 7.3
Release 7.3 of the Functional Gene Repository is now live at http://fungene.cme.msu.edu/. This release includes a new gene, nxrB, and updated with ...

10/16/2013  RDP 11 and RDPipeline are now live
RDP 11 and the new RDP Pipeline for Amplicon Sequences (RDPipeline) are now live and available to researchers.

10/16/2013  RDP 11 Major Release Tonight
RDP sites will be down this evening for new release deployment

10/09/2013  FunGene article published
The article describing our FunGene data and tools is published in Frontier in Microbiolgy.

10/09/2013  RDP FrameBot article published
The article describing RDP FrameBot (a frameshift correction tool) is published in the journal mBio

10/01/2013  RDP Staff and Poster
5th Argonne Soil Metagenomics Meeting

RDP Release 11, Update 2 :: March 7, 2014

2,929,433 16S rRNAs :: 95,365 Fungal 28S rRNAs
Find out what's new in RDP Release 11.2 here.

Cite RDP's latest tool articles.


RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community. New to RDP release 11:

  • RDP tools have been updated to work with the new fungal 28S rRNA sequence collection.
  • A new Fungal 28S Aligner and updated Bacterial and Archaeal 16S Aligner. We optimized the parameters for these secondary-structure based Infernal aligners to provide improved handling for partial sequences.
  • Updated RDPipeline offers extended processing and analysis tools to process high-throughput sequencing data, including single-strand and paired-end reads.
  • Most of the RDP tools are now available as open source packages for users to incorporate in their local workflow.

Hierarchy Browser
Hierarchy
Browser

RDP Classifier

Classifier

Probe Match
Probe
Match

FunGene

FunGene

MIxS GoogleSheets
MIxS
GoogleSheets

Library Compare
Library
Compare

Sequence Match
Sequence
Match

RDPipeline

RDPipeline

RDP Aligner

Aligner

Tree Builder
Tree
Builder

RDP Open Source Tools
RDP
Open Source

Tutorials

Tutorials

RDP's mission and funding:

Part of RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.

DOE   NIEHS Superfund Research ProgramNIH Human Microbiome Project

Questions/comments: rdpstaff@msu.edu
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