RIBOSOMAL DATABASE PROJECT - II of the Center for Microbial Ecology at Michigan State University
Release
9.60 ::
Apr 22, 2008 ::
511,847 16S rRNAs
(More on Release 9 and monthly updates
is available in the release notes.)
04/22/2008
RDP 9, Update 60 Released. [more]
03/05/2008
RDP 9, Update 59 Released.
This release includes a beta version of the new Taxomatic visualization tool. [more]
08/08/2007
RDP 9, Update 53 Released using TOBA Release 7.7 (The Taxonomic Outline of Bacteria and Archaea). [more]
06/08/2007
RDP 9, Update 51 Released. It's now possible to find sequences from completed genomes by searching with the GenBank Project ID. [more]
04/03/2007
RDP 9, Update 49 Released. Upgraded Tree Builder now includes bootstrap confidence estimates.[more]
03/22/2007
New video tutorials available in Flash, Quicktime and Windows Media formats. [more]
08/22/2006
Introducing simple chromatograms upload and research buddies to myRDP.
Quality filter can be applied to view only good quality sequences.[more]
03/23/2006
Batch retrieval by GenBank accession numbers available.[more]
02/02/2006
RDP 9, Update 36 Released. ARB import help available. [more]
RDP Analysis Tools
Educational :: Class Assignment Generator - Professors / Instructors: Generate assignments for your class that use RDP Classifier and Seqmatch.
- myRDP - Align and Classify your 16S rRNA sequences. Use the RDP Pipeline to process sequence libraries from raw sequencer output to analysis.
- Hierarchy Browser -
Browse a phylogenetic hierarchy and compile a list of 16S rRNA sequences for download or use. Also browse by Publication or Genome.
- Tree Builder - Create a phylogenetic tree.
- Classifier -
Assign 16S rRNA sequences to our taxonomical hierarchy.
- Library Compare -
Compare two sequence libraries using the RDP Classifier.
- Sequence Match -
Upload your sequence and search for its nearest neighbors.
- Probe Match -
See what your probe targets in our database.
- Other Resources -
Alignment files, ASM posters, user-submitted data.
- Release 8.1 - The old RDP site (Release 8.1). Uses an outdated dataset. Please Note: The RDP 8.1 site will be shutdown soon
The Ribosomal Database Project (RDP) provides ribosome related data and services to the scientific community, including online data analysis and aligned and annotated Bacterial small-subunit 16S rRNA sequences.
Sponsors:
Support:
Part of the RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.
Questions/comments: rdpstaff@msu.edu
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