RDP: Release 11

ANNOUNCEMENTS

RDP News

11/14/2018  myRDP and RDP Pipeline back to normal
The issue that caused delayed jobs in myRDP and RDP Pipeline jobs has been resolved. All functions are working normally.

06/05/2018  RDP phone system restored
RDP phone service is now back online.

06/04/2018  RDP phone system down
RDP phone system is temporarily out of service!

03/05/2018  RDP web tool problems fixed!

03/05/2018  RDP web tool problems
We apologize for ongoing problems with several RDP web tools. Our team is now working hard to get them fixed!

11/10/2017  myRDP login problem fixed!

11/09/2017  Apologize for the problem with myRDP login.
Our team is working to fix it as soon as possible.

05/16/2017  Apology for slow/NO connection to RDP tools today
Thanks to Alex/Brian, etc. for working things out in the server room

05/10/2017  RDP Director at GSC 19, May 14-17
Genomic Standards Consortium Meeting, Brisbane, Queensland, Australia

05/10/2017  Possible Friday, May 12, morning interruptions
Emergency Generator Testing from 9-10 A.M.

RDP Release 11, Update 5 :: September 30, 2016

3,356,809 16S rRNAs :: 125,525 Fungal 28S rRNAs
Find out what's new in RDP Release 11.5 here.

Cite RDP's latest tool articles.


RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community. New to RDP release 11:

  • RDP tools have been updated to work with the new fungal 28S rRNA sequence collection.
  • A new Fungal 28S Aligner and updated Bacterial and Archaeal 16S Aligner. We optimized the parameters for these secondary-structure based Infernal aligners to provide improved handling for partial sequences.
  • Updated RDPipeline offers extended processing and analysis tools to process high-throughput sequencing data, including single-strand and paired-end reads.
  • Most of the RDP tools are now available as open source packages for users to incorporate in their local workflow.

Hierarchy Browser
Hierarchy
Browser

RDP Classifier

Classifier

Probe Match
Probe
Match

FunGene

FunGene

MIxS GoogleSheets
MIxS
GoogleSheets

Library Compare
Library
Compare

Sequence Match
Sequence
Match

RDPipeline

RDPipeline

RDP Aligner

Aligner

Tree Builder
Tree
Builder

RDP Open Source Tools
RDP
Open Source

Tutorials

Tutorials

RDP's mission and funding:

Part of RDP's mission is to provide support to our users. Email and phone contacts are available on the contacts page.

DOE   NIEHS Superfund Research ProgramNIH Human Microbiome Project

Questions/comments: rdpstaff@msu.edu
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